Software
ImmQuant (download, manual) is a software for studying the physiology of immune-cell types in complex tissues on the basis of gene-expression data, without the need for experimental cell sorting. Frishberg A, Brodt A, Steuerman Y, Gat-Viks I: ImmQuant: a user-friendly tool for inferring immune cell-type composition from gene-expression data. Bioinformatics 2016, 32(24):3842-3843.
A server for inferring immune-cell quantities related to disease states.
A server for discovering GEnetic & MOlecular mechanisms of Trait.
A server for discovering dynamic genetic effects in temporal transcription responses.
A server for digital cell quantity estimation.
A tool for practical microarray experimental design that can suggest experiments so as to avoid ambiguity in the identification of regulatory relatrionships.
A package for understanding gene sequence variation in the context of transcription regulation.
Metareg is a tool for modeling of biological systems that can suggest model refinements
based on consistency with gene expression datasets.